Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 CCS-201ENST00000310190 942 ntTSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 ACTG1P4-201ENST00000425123 1122 ntBASIC14.55□□□□□ -0.08
NKX3-1Q99801 AL450487.1-201ENST00000426799 995 ntBASIC14.55□□□□□ -0.08
NKX3-1Q99801 DRAXINP1-201ENST00000437611 948 ntBASIC14.55□□□□□ -0.08
NKX3-1Q99801 DUSP5P1-201ENST00000441325 1139 ntBASIC14.55□□□□□ -0.08
NKX3-1Q99801 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 BX005266.1-201ENST00000473402 457 ntBASIC14.55□□□□□ -0.08
NKX3-1Q99801 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 AC022188.1-201ENST00000620960 1664 ntBASIC14.55□□□□□ -0.08
NKX3-1Q99801 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
NKX3-1Q99801 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX3-1Q99801 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 AC099336.1-202ENST00000602961 463 ntBASIC14.54□□□□□ -0.08
NKX3-1Q99801 AL121894.2-201ENST00000602977 491 ntBASIC14.54□□□□□ -0.08
NKX3-1Q99801 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 AC114341.1-201ENST00000618070 349 ntBASIC14.54□□□□□ -0.08
NKX3-1Q99801 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 AC006538.1-201ENST00000567905 1585 ntBASIC14.54□□□□□ -0.08
NKX3-1Q99801 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
NKX3-1Q99801 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX3-1Q99801 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms