Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.56■■□□□ 1.04
RTF1Q92541 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RTF1Q92541 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC21.56■■□□□ 1.04
RTF1Q92541 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RTF1Q92541 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
RTF1Q92541 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 TREML5P-201ENST00000421694 576 ntBASIC21.56■■□□□ 1.04
RTF1Q92541 FAM8A3P-201ENST00000427218 844 ntBASIC21.56■■□□□ 1.04
RTF1Q92541 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.56■■□□□ 1.04
RTF1Q92541 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.56■■□□□ 1.04
RTF1Q92541 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.56■■□□□ 1.04
RTF1Q92541 RNA5SP421-201ENST00000516864 134 ntBASIC21.56■■□□□ 1.04
RTF1Q92541 AC069120.2-201ENST00000524091 540 ntBASIC21.56■■□□□ 1.04
RTF1Q92541 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.56■■□□□ 1.04
RTF1Q92541 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.56■■□□□ 1.04
RTF1Q92541 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.56■■□□□ 1.04
RTF1Q92541 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.56■■□□□ 1.04
RTF1Q92541 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.56■■□□□ 1.04
RTF1Q92541 AL096865.1-201ENST00000606796 927 ntBASIC21.56■■□□□ 1.04
RTF1Q92541 FO538757.1-201ENST00000623083 1397 ntBASIC21.56■■□□□ 1.04
RTF1Q92541 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RTF1Q92541 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 GGT4P-201ENST00000623672 1708 ntBASIC21.55■■□□□ 1.04
RTF1Q92541 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RTF1Q92541 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 FAM220BP-201ENST00000377689 816 ntBASIC21.55■■□□□ 1.04
RTF1Q92541 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
RTF1Q92541 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.55■■□□□ 1.04
RTF1Q92541 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.55■■□□□ 1.04
RTF1Q92541 BCRP1-201ENST00000444246 691 ntBASIC21.55■■□□□ 1.04
RTF1Q92541 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.55■■□□□ 1.04
RTF1Q92541 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
RTF1Q92541 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
RTF1Q92541 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.55■■□□□ 1.04
RTF1Q92541 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RTF1Q92541 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RTF1Q92541 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
RTF1Q92541 BASP1P1-201ENST00000430708 665 ntBASIC21.54■■□□□ 1.04
RTF1Q92541 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.54■■□□□ 1.04
RTF1Q92541 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 IGHV3-42-201ENST00000520410 361 ntBASIC21.54■■□□□ 1.04
RTF1Q92541 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.54■■□□□ 1.04
RTF1Q92541 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms