Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 GGT4P-201ENST00000623672 1708 ntBASIC12.53□□□□□ -0.4
FOXA3P55318 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
FOXA3P55318 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
FOXA3P55318 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
FOXA3P55318 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC12.52□□□□□ -0.4
FOXA3P55318 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.4
FOXA3P55318 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA3P55318 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
FOXA3P55318 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 HLA-F-220ENST00000434407 884 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 CD81-212ENST00000526072 1172 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 DUX4L17-201ENST00000557360 1267 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC12.52□□□□□ -0.41
FOXA3P55318 AC013467.2-201ENST00000605472 835 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 AC079602.3-201ENST00000623931 403 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA3P55318 AL021920.2-201ENST00000624828 1351 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 KRT8P10-201ENST00000450021 1447 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
FOXA3P55318 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA3P55318 AC009336.1-201ENST00000608941 1553 ntBASIC12.52□□□□□ -0.41
FOXA3P55318 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.51□□□□□ -0.41
FOXA3P55318 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
FOXA3P55318 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC12.51□□□□□ -0.41
FOXA3P55318 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC12.51□□□□□ -0.41
FOXA3P55318 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA3P55318 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA3P55318 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms