Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC22.65■■□□□ 1.22
MSH6P52701 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 MCC-208ENST00000514701 2855 ntTSL 2 BASIC22.65■■□□□ 1.22
MSH6P52701 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC22.65■■□□□ 1.22
MSH6P52701 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
MSH6P52701 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC22.64■■□□□ 1.22
MSH6P52701 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
MSH6P52701 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
MSH6P52701 AGER-203ENST00000375065 665 ntTSL 2 BASIC22.64■■□□□ 1.22
MSH6P52701 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.64■■□□□ 1.22
MSH6P52701 RPL28-203ENST00000428193 573 ntTSL 2 BASIC22.64■■□□□ 1.22
MSH6P52701 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC22.64■■□□□ 1.22
MSH6P52701 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC22.64■■□□□ 1.22
MSH6P52701 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
MSH6P52701 FOS-206ENST00000555347 1280 ntTSL 2 BASIC22.64■■□□□ 1.22
MSH6P52701 RPL28-207ENST00000558815 616 ntTSL 2 BASIC22.64■■□□□ 1.22
MSH6P52701 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC22.64■■□□□ 1.22
MSH6P52701 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
MSH6P52701 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
MSH6P52701 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC22.64■■□□□ 1.22
MSH6P52701 AC008764.6-201ENST00000595909 2069 ntBASIC22.64■■□□□ 1.22
MSH6P52701 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
MSH6P52701 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC22.64■■□□□ 1.21
MSH6P52701 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC22.64■■□□□ 1.21
MSH6P52701 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
MSH6P52701 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC22.64■■□□□ 1.21
MSH6P52701 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
MSH6P52701 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.21
MSH6P52701 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
MSH6P52701 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
MSH6P52701 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 MGST3-203ENST00000367885 680 ntTSL 2 BASIC22.63■■□□□ 1.21
MSH6P52701 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
MSH6P52701 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 SLC25A24P2-201ENST00000415059 510 ntBASIC22.63■■□□□ 1.21
MSH6P52701 IGHJ2P-201ENST00000454480 60 ntBASIC22.63■■□□□ 1.21
MSH6P52701 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
MSH6P52701 AC068587.3-201ENST00000526613 355 ntBASIC22.63■■□□□ 1.21
MSH6P52701 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC22.63■■□□□ 1.21
MSH6P52701 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC22.63■■□□□ 1.21
MSH6P52701 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC22.63■■□□□ 1.21
MSH6P52701 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH6P52701 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC22.63■■□□□ 1.21
MSH6P52701 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
MSH6P52701 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
MSH6P52701 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC22.63■■□□□ 1.21
MSH6P52701 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH6P52701 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH6P52701 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH6P52701 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC22.63■■□□□ 1.21
MSH6P52701 RPL13AP20-201ENST00000459725 609 ntBASIC22.63■■□□□ 1.21
MSH6P52701 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
MSH6P52701 AC013467.2-201ENST00000605472 835 ntBASIC22.63■■□□□ 1.21
MSH6P52701 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC22.63■■□□□ 1.21
MSH6P52701 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
MSH6P52701 CD276-203ENST00000537340 2439 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH6P52701 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH6P52701 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
MSH6P52701 AC016396.2-201ENST00000562575 1417 ntBASIC22.62■■□□□ 1.21
MSH6P52701 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH6P52701 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
MSH6P52701 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH6P52701 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH6P52701 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH6P52701 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH6P52701 AL021578.1-201ENST00000613646 709 ntBASIC22.62■■□□□ 1.21
MSH6P52701 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH6P52701 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
MSH6P52701 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
MSH6P52701 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
MSH6P52701 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms