Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 RNF152P1-201ENST00000397754 604 ntBASIC13.85□□□□□ -0.19
HOXA1P49639 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
HOXA1P49639 KRT18P38-201ENST00000449496 1282 ntBASIC13.85□□□□□ -0.19
HOXA1P49639 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.85□□□□□ -0.19
HOXA1P49639 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.85□□□□□ -0.19
HOXA1P49639 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.85□□□□□ -0.19
HOXA1P49639 AC066615.1-201ENST00000640911 628 ntBASIC13.85□□□□□ -0.19
HOXA1P49639 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
HOXA1P49639 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.85□□□□□ -0.19
HOXA1P49639 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.84□□□□□ -0.19
HOXA1P49639 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
HOXA1P49639 TSPY5P-201ENST00000426936 936 ntBASIC13.84□□□□□ -0.19
HOXA1P49639 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 RNF126P1-202ENST00000569893 925 ntBASIC13.84□□□□□ -0.19
HOXA1P49639 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
HOXA1P49639 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 AC139749.1-202ENST00000617529 3139 ntBASIC13.84□□□□□ -0.19
HOXA1P49639 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXA1P49639 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 RNF216P1-203ENST00000404404 2427 ntBASIC13.84□□□□□ -0.19
HOXA1P49639 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.84□□□□□ -0.19
HOXA1P49639 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXA1P49639 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.83□□□□□ -0.19
HOXA1P49639 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
HOXA1P49639 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.83□□□□□ -0.19
HOXA1P49639 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
HOXA1P49639 AC078925.2-201ENST00000624013 1973 ntBASIC13.83□□□□□ -0.19
HOXA1P49639 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXA1P49639 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.83□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms