Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 KRT18P27-201ENST00000427733 1299 ntBASIC14.63□□□□□ -0.07
CX3CR1P49238 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 RNPS1P1-201ENST00000507437 918 ntBASIC14.63□□□□□ -0.07
CX3CR1P49238 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.63□□□□□ -0.07
CX3CR1P49238 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.63□□□□□ -0.07
CX3CR1P49238 MIR4492-201ENST00000581627 80 ntBASIC14.63□□□□□ -0.07
CX3CR1P49238 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.63□□□□□ -0.07
CX3CR1P49238 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CR1P49238 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CX3CR1P49238 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 AL513523.2-202ENST00000427283 2040 ntBASIC14.63□□□□□ -0.07
CX3CR1P49238 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CX3CR1P49238 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 GGT3P-204ENST00000453783 1664 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 AC073621.1-201ENST00000392730 636 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 KRT8P39-201ENST00000396270 1433 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
CX3CR1P49238 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 PMS2P1-201ENST00000431037 1228 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.62□□□□□ -0.07
CX3CR1P49238 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.62□□□□□ -0.07
CX3CR1P49238 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.62□□□□□ -0.07
CX3CR1P49238 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.62□□□□□ -0.07
CX3CR1P49238 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 TP73-AS1-207ENST00000624167 988 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 AL353732.1-201ENST00000569618 1459 ntBASIC14.62□□□□□ -0.07
CX3CR1P49238 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CX3CR1P49238 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CX3CR1P49238 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CX3CR1P49238 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.61□□□□□ -0.07
CX3CR1P49238 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CX3CR1P49238 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CX3CR1P49238 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CX3CR1P49238 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 AL512652.2-201ENST00000625156 1716 ntBASIC14.61□□□□□ -0.07
CX3CR1P49238 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CX3CR1P49238 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CX3CR1P49238 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms