Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC073347.1-201ENST00000421633 2643 ntBASIC16.41■□□□□ 0.22
MKS1Q9NXB0 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 AC092919.2-201ENST00000623631 1645 ntBASIC16.41■□□□□ 0.22
MKS1Q9NXB0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
MKS1Q9NXB0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 PTCHD3P3-201ENST00000403073 906 ntBASIC16.4■□□□□ 0.22
MKS1Q9NXB0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.4■□□□□ 0.22
MKS1Q9NXB0 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
MKS1Q9NXB0 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 IER3-202ENST00000376377 1350 ntBASIC16.39■□□□□ 0.21
MKS1Q9NXB0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 AC099063.4-201ENST00000641099 1602 ntBASIC16.39■□□□□ 0.21
MKS1Q9NXB0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ARMC10P1-201ENST00000313754 855 ntBASIC16.39■□□□□ 0.21
MKS1Q9NXB0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 AC132008.2-207ENST00000454517 770 ntBASIC16.39■□□□□ 0.21
MKS1Q9NXB0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 PPT1-215ENST00000641471 2368 ntBASIC16.39■□□□□ 0.21
MKS1Q9NXB0 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MKS1Q9NXB0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms