Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP29Q9HBJ7 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USP29Q9HBJ7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
USP29Q9HBJ7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 AC087641.1-201ENST00000557561 1021 ntBASIC17.12■□□□□ 0.33
USP29Q9HBJ7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP29Q9HBJ7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.11■□□□□ 0.33
USP29Q9HBJ7 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AC007967.2-201ENST00000432613 625 ntBASIC17.11■□□□□ 0.33
USP29Q9HBJ7 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AC064836.3-201ENST00000607928 673 ntBASIC17.11■□□□□ 0.33
USP29Q9HBJ7 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.11■□□□□ 0.33
USP29Q9HBJ7 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP29Q9HBJ7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 GPAA1P2-202ENST00000606848 1787 ntBASIC17.1■□□□□ 0.33
USP29Q9HBJ7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms