Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TRIM56Q9BRZ2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17■□□□□ 0.31
TRIM56Q9BRZ2 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 UNC93B7-201ENST00000509439 705 ntBASIC17■□□□□ 0.31
TRIM56Q9BRZ2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 AC002310.6-201ENST00000624451 1377 ntBASIC17■□□□□ 0.31
TRIM56Q9BRZ2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM56Q9BRZ2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 ME2P1-201ENST00000426028 1970 ntBASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 AC087163.2-201ENST00000457299 853 ntBASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM56Q9BRZ2 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms