Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AL390754.1-201ENST00000619088 582 ntBASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AC006277.1-201ENST00000624348 1610 ntBASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AC018695.7-201ENST00000624587 2492 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 SNX33P1-201ENST00000592116 1762 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 RBPMS2P1-201ENST00000437762 623 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AC140658.5-201ENST00000438532 169 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 FAM207CP-201ENST00000443486 507 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AC125807.1-201ENST00000483097 614 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 AC006538.1-201ENST00000567905 1585 ntBASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SH3RF1Q7Z6J0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 AL139011.1-202ENST00000642063 584 ntBASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 AC008677.1-201ENST00000519230 1561 ntBASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SH3RF1Q7Z6J0 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 DOC2GP-204ENST00000639052 2548 ntBASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms