Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 Z97205.2-201ENST00000564697 1639 ntBASIC17.27■□□□□ 0.36
CHD9Q3L8U1 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.27■□□□□ 0.36
CHD9Q3L8U1 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHD9Q3L8U1 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AP001258.2-201ENST00000529891 490 ntBASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC013467.2-201ENST00000605472 835 ntBASIC17.26■□□□□ 0.35
CHD9Q3L8U1 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC024267.1-201ENST00000582320 895 ntBASIC17.26■□□□□ 0.35
CHD9Q3L8U1 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC104457.1-201ENST00000401024 814 ntBASIC17.26■□□□□ 0.35
CHD9Q3L8U1 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHD9Q3L8U1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 RPL13P2-201ENST00000440687 659 ntBASIC17.25■□□□□ 0.35
CHD9Q3L8U1 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PFN1P12-201ENST00000455938 534 ntBASIC17.25■□□□□ 0.35
CHD9Q3L8U1 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AL158212.4-201ENST00000624062 1286 ntBASIC17.25■□□□□ 0.35
CHD9Q3L8U1 CU634019.7-201ENST00000624153 1185 ntBASIC17.25■□□□□ 0.35
CHD9Q3L8U1 FP236241.2-201ENST00000624906 1185 ntBASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 AL031731.1-201ENST00000642131 2094 ntBASIC17.25■□□□□ 0.35
CHD9Q3L8U1 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms