Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 MIR4751-201ENST00000578027 74 ntBASIC16.04■□□□□ 0.16
PCDH1Q08174 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDH1Q08174 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDH1Q08174 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 AC021097.1-201ENST00000607902 574 ntBASIC16.04■□□□□ 0.16
PCDH1Q08174 Z83851.2-201ENST00000609564 659 ntBASIC16.04■□□□□ 0.16
PCDH1Q08174 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDH1Q08174 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH1Q08174 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PCDH1Q08174 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH1Q08174 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDH1Q08174 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDH1Q08174 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDH1Q08174 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 FDX1P1-201ENST00000449115 551 ntBASIC16.03■□□□□ 0.16
PCDH1Q08174 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.03■□□□□ 0.16
PCDH1Q08174 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDH1Q08174 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
PCDH1Q08174 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
PCDH1Q08174 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDH1Q08174 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDH1Q08174 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PCDH1Q08174 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PCDH1Q08174 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 PCGF3-213ENST00000620529 1899 ntBASIC16.03■□□□□ 0.16
PCDH1Q08174 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PCDH1Q08174 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDH1Q08174 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDH1Q08174 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDH1Q08174 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDH1Q08174 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH1Q08174 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDH1Q08174 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PCDH1Q08174 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH1Q08174 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 AL391005.1-201ENST00000623953 2435 ntBASIC16.02■□□□□ 0.16
PCDH1Q08174 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH1Q08174 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
PCDH1Q08174 AC109635.5-201ENST00000533593 962 ntBASIC16.02■□□□□ 0.16
PCDH1Q08174 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.02■□□□□ 0.16
PCDH1Q08174 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDH1Q08174 AC034105.1-201ENST00000563488 319 ntBASIC16.02■□□□□ 0.16
PCDH1Q08174 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDH1Q08174 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDH1Q08174 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDH1Q08174 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms