Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A3Q01955 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.68■□□□□ 0.26
COL4A3Q01955 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL4A3Q01955 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A3Q01955 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A3Q01955 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A3Q01955 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL4A3Q01955 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A3Q01955 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL4A3Q01955 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.67■□□□□ 0.26
COL4A3Q01955 AL391256.1-201ENST00000443260 1855 ntBASIC16.67■□□□□ 0.26
COL4A3Q01955 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.67■□□□□ 0.26
COL4A3Q01955 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL4A3Q01955 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A3Q01955 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A3Q01955 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.67■□□□□ 0.26
COL4A3Q01955 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A3Q01955 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A3Q01955 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A3Q01955 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
COL4A3Q01955 AL589702.1-201ENST00000641229 1509 ntBASIC16.67■□□□□ 0.26
COL4A3Q01955 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.66■□□□□ 0.26
COL4A3Q01955 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.66■□□□□ 0.26
COL4A3Q01955 AC024267.1-201ENST00000582320 895 ntBASIC16.66■□□□□ 0.26
COL4A3Q01955 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.66■□□□□ 0.26
COL4A3Q01955 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.66■□□□□ 0.26
COL4A3Q01955 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 AC005915.1-201ENST00000624912 2018 ntBASIC16.66■□□□□ 0.26
COL4A3Q01955 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 HLA-A-202ENST00000376806 1854 ntBASIC16.66■□□□□ 0.26
COL4A3Q01955 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A3Q01955 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A3Q01955 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL4A3Q01955 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.66■□□□□ 0.26
COL4A3Q01955 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A3Q01955 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A3Q01955 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A3Q01955 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 COX11-210ENST00000639671 696 ntBASIC16.65■□□□□ 0.26
COL4A3Q01955 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A3Q01955 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 GGT3P-204ENST00000453783 1664 ntBASIC16.65■□□□□ 0.26
COL4A3Q01955 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL4A3Q01955 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL4A3Q01955 AC078925.2-201ENST00000624013 1973 ntBASIC16.65■□□□□ 0.26
COL4A3Q01955 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A3Q01955 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 AC087499.6-201ENST00000411576 835 ntBASIC16.65■□□□□ 0.26
COL4A3Q01955 AC234783.1-201ENST00000441761 496 ntBASIC16.65■□□□□ 0.26
COL4A3Q01955 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A3Q01955 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A3Q01955 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A3Q01955 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A3Q01955 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
COL4A3Q01955 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
COL4A3Q01955 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A3Q01955 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms