Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.1■□□□□ 0.17
FOXA1P55317 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 UNC93B7-201ENST00000509439 705 ntBASIC16.1■□□□□ 0.17
FOXA1P55317 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.1■□□□□ 0.17
FOXA1P55317 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
FOXA1P55317 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.1■□□□□ 0.17
FOXA1P55317 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.1■□□□□ 0.17
FOXA1P55317 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
FOXA1P55317 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
FOXA1P55317 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
FOXA1P55317 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
FOXA1P55317 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.09■□□□□ 0.17
FOXA1P55317 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.09■□□□□ 0.17
FOXA1P55317 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
FOXA1P55317 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.09■□□□□ 0.17
FOXA1P55317 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 OR7E14P-202ENST00000530490 1290 ntBASIC16.09■□□□□ 0.17
FOXA1P55317 AC087641.1-201ENST00000557561 1021 ntBASIC16.09■□□□□ 0.17
FOXA1P55317 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.09■□□□□ 0.17
FOXA1P55317 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.09■□□□□ 0.17
FOXA1P55317 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.09■□□□□ 0.17
FOXA1P55317 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.09■□□□□ 0.17
FOXA1P55317 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
FOXA1P55317 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA1P55317 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
FOXA1P55317 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
FOXA1P55317 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
FOXA1P55317 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
FOXA1P55317 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
FOXA1P55317 LINC01144-201ENST00000626198 1710 ntBASIC16.08■□□□□ 0.17
FOXA1P55317 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.08■□□□□ 0.17
FOXA1P55317 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.08■□□□□ 0.17
FOXA1P55317 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
FOXA1P55317 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
FOXA1P55317 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.08■□□□□ 0.16
FOXA1P55317 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.08■□□□□ 0.16
FOXA1P55317 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms