Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.22■□□□□ 0.67
ERCC3P19447 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.22■□□□□ 0.67
ERCC3P19447 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.22■□□□□ 0.67
ERCC3P19447 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.22■□□□□ 0.67
ERCC3P19447 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ERCC3P19447 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.22■□□□□ 0.67
ERCC3P19447 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.22■□□□□ 0.67
ERCC3P19447 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.22■□□□□ 0.67
ERCC3P19447 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.22■□□□□ 0.67
ERCC3P19447 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.22■□□□□ 0.67
ERCC3P19447 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.22■□□□□ 0.67
ERCC3P19447 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.22■□□□□ 0.67
ERCC3P19447 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.22■□□□□ 0.67
ERCC3P19447 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ERCC3P19447 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ERCC3P19447 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ERCC3P19447 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.21■□□□□ 0.67
ERCC3P19447 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.21■□□□□ 0.67
ERCC3P19447 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.21■□□□□ 0.67
ERCC3P19447 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 MIR4453-201ENST00000584019 89 ntBASIC19.21■□□□□ 0.67
ERCC3P19447 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.21■□□□□ 0.67
ERCC3P19447 LINC02560-201ENST00000596379 459 ntBASIC19.21■□□□□ 0.67
ERCC3P19447 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.21■□□□□ 0.67
ERCC3P19447 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
ERCC3P19447 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ERCC3P19447 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.21■□□□□ 0.67
ERCC3P19447 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.21■□□□□ 0.67
ERCC3P19447 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.2■□□□□ 0.66
ERCC3P19447 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.2■□□□□ 0.66
ERCC3P19447 FRMD8P1-201ENST00000440433 1524 ntBASIC19.2■□□□□ 0.66
ERCC3P19447 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.2■□□□□ 0.66
ERCC3P19447 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.2■□□□□ 0.66
ERCC3P19447 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
ERCC3P19447 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.2■□□□□ 0.66
ERCC3P19447 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 AC092580.3-201ENST00000430932 139 ntBASIC19.2■□□□□ 0.66
ERCC3P19447 AL512638.1-201ENST00000457493 794 ntBASIC19.2■□□□□ 0.66
ERCC3P19447 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.2■□□□□ 0.66
ERCC3P19447 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.2■□□□□ 0.66
ERCC3P19447 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.2■□□□□ 0.66
ERCC3P19447 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
ERCC3P19447 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
ERCC3P19447 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ERCC3P19447 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.2■□□□□ 0.66
ERCC3P19447 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
ERCC3P19447 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 KRT8P49-201ENST00000604166 1432 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms