Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VPS4BO75351 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS4BO75351 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS4BO75351 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS4BO75351 LINC00982-205ENST00000420957 435 ntBASIC16.34■□□□□ 0.21
VPS4BO75351 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 DNAJB3-202ENST00000449667 1266 ntBASIC16.34■□□□□ 0.21
VPS4BO75351 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS4BO75351 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.34■□□□□ 0.21
VPS4BO75351 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS4BO75351 MIR3197-201ENST00000582241 73 ntBASIC16.34■□□□□ 0.21
VPS4BO75351 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VPS4BO75351 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS4BO75351 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.34■□□□□ 0.21
VPS4BO75351 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
VPS4BO75351 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 AC006277.1-201ENST00000624348 1610 ntBASIC16.34■□□□□ 0.21
VPS4BO75351 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS4BO75351 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.33■□□□□ 0.21
VPS4BO75351 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VPS4BO75351 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS4BO75351 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS4BO75351 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS4BO75351 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VPS4BO75351 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
VPS4BO75351 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.21
VPS4BO75351 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
VPS4BO75351 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.33■□□□□ 0.21
VPS4BO75351 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS4BO75351 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS4BO75351 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS4BO75351 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.33■□□□□ 0.2
VPS4BO75351 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 MTDHP5-201ENST00000598980 586 ntBASIC16.33■□□□□ 0.2
VPS4BO75351 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS4BO75351 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS4BO75351 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 AP005117.1-201ENST00000584346 1413 ntBASIC16.33■□□□□ 0.2
VPS4BO75351 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS4BO75351 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.33■□□□□ 0.2
VPS4BO75351 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.33■□□□□ 0.2
VPS4BO75351 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS4BO75351 AL356309.3-201ENST00000624132 1934 ntBASIC16.33■□□□□ 0.2
VPS4BO75351 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms