Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.66■□□□□ 0.26
SHOX2O60902 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SHOX2O60902 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SHOX2O60902 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC16.66■□□□□ 0.26
SHOX2O60902 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SHOX2O60902 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
SHOX2O60902 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.65■□□□□ 0.26
SHOX2O60902 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SHOX2O60902 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHOX2O60902 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 AP002414.1-201ENST00000391405 1147 ntBASIC16.65■□□□□ 0.26
SHOX2O60902 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.65■□□□□ 0.26
SHOX2O60902 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.65■□□□□ 0.26
SHOX2O60902 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.65■□□□□ 0.26
SHOX2O60902 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.65■□□□□ 0.26
SHOX2O60902 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.65■□□□□ 0.26
SHOX2O60902 MIR4785-201ENST00000585005 73 ntBASIC16.65■□□□□ 0.26
SHOX2O60902 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 AC073912.3-201ENST00000624414 853 ntBASIC16.65■□□□□ 0.26
SHOX2O60902 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.65■□□□□ 0.26
SHOX2O60902 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.65■□□□□ 0.26
SHOX2O60902 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHOX2O60902 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHOX2O60902 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.64■□□□□ 0.25
SHOX2O60902 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.64■□□□□ 0.25
SHOX2O60902 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.64■□□□□ 0.25
SHOX2O60902 AL355075.4-201ENST00000554988 638 ntBASIC16.64■□□□□ 0.25
SHOX2O60902 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.64■□□□□ 0.25
SHOX2O60902 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SHOX2O60902 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SHOX2O60902 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHOX2O60902 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SHOX2O60902 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHOX2O60902 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 AL353593.2-201ENST00000602529 1483 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 LINC01144-201ENST00000626198 1710 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms