Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 GPR32P1-201ENST00000601788 811 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC010947.1-201ENST00000623454 693 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC073912.3-201ENST00000624414 853 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 GGT4P-201ENST00000623672 1708 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 AC009336.1-201ENST00000608941 1553 ntBASIC12.22□□□□□ -0.45
SMKR1H3BMG3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
SMKR1H3BMG3 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 AC006449.6-201ENST00000612330 2296 ntBASIC12.21□□□□□ -0.45
SMKR1H3BMG3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 MME-217ENST00000616757 1315 ntTSL 5 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 NAPSB-206ENST00000562112 1266 ntBASIC12.21□□□□□ -0.45
SMKR1H3BMG3 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SMKR1H3BMG3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 LINC00895-201ENST00000629028 1637 ntBASIC12.21□□□□□ -0.46
SMKR1H3BMG3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 PPT1-215ENST00000641471 2368 ntBASIC12.21□□□□□ -0.46
SMKR1H3BMG3 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SMKR1H3BMG3 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 AC022532.1-201ENST00000624563 1728 ntBASIC12.2□□□□□ -0.46
SMKR1H3BMG3 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
SMKR1H3BMG3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms