Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 MIR4492-201ENST00000581627 80 ntBASIC17.21■□□□□ 0.35
HPS4Q9NQG7 CYP2A7P1-201ENST00000595391 815 ntBASIC17.21■□□□□ 0.35
HPS4Q9NQG7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 AC239800.4-201ENST00000603712 296 ntBASIC17.21■□□□□ 0.35
HPS4Q9NQG7 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
HPS4Q9NQG7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
HPS4Q9NQG7 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.21■□□□□ 0.34
HPS4Q9NQG7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HPS4Q9NQG7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.21■□□□□ 0.34
HPS4Q9NQG7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AC097493.3-201ENST00000509725 367 ntBASIC17.2■□□□□ 0.34
HPS4Q9NQG7 IGHV3-42-201ENST00000520410 361 ntBASIC17.2■□□□□ 0.34
HPS4Q9NQG7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AL158211.3-201ENST00000607385 239 ntBASIC17.2■□□□□ 0.34
HPS4Q9NQG7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.2■□□□□ 0.34
HPS4Q9NQG7 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 TNRC18P3-201ENST00000441896 2691 ntBASIC17.19■□□□□ 0.34
HPS4Q9NQG7 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 LINC00895-201ENST00000629028 1637 ntBASIC17.19■□□□□ 0.34
HPS4Q9NQG7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.19■□□□□ 0.34
HPS4Q9NQG7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 AC069120.2-201ENST00000524091 540 ntBASIC17.19■□□□□ 0.34
HPS4Q9NQG7 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.19■□□□□ 0.34
HPS4Q9NQG7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HPS4Q9NQG7 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
HPS4Q9NQG7 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms