Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 RN7SL618P-201ENST00000477850 296 ntBASIC18.47■□□□□ 0.55
VTA1Q9NP79 AC135586.1-201ENST00000539323 574 ntBASIC18.47■□□□□ 0.55
VTA1Q9NP79 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 TP53TG3HP-202ENST00000569755 579 ntBASIC18.47■□□□□ 0.55
VTA1Q9NP79 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 AL132655.2-201ENST00000596276 594 ntBASIC18.47■□□□□ 0.55
VTA1Q9NP79 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VTA1Q9NP79 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VTA1Q9NP79 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 AL353779.1-201ENST00000434793 351 ntBASIC18.46■□□□□ 0.55
VTA1Q9NP79 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.46■□□□□ 0.55
VTA1Q9NP79 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 AL031731.1-201ENST00000642131 2094 ntBASIC18.46■□□□□ 0.55
VTA1Q9NP79 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
VTA1Q9NP79 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VTA1Q9NP79 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 SERBP1P3-201ENST00000459980 809 ntBASIC18.45■□□□□ 0.54
VTA1Q9NP79 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 AL512361.1-201ENST00000554200 418 ntBASIC18.45■□□□□ 0.54
VTA1Q9NP79 AC010336.2-201ENST00000564226 506 ntBASIC18.45■□□□□ 0.54
VTA1Q9NP79 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.45■□□□□ 0.54
VTA1Q9NP79 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VTA1Q9NP79 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms