Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 AL773604.1-201ENST00000617417 272 ntBASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 AL031008.1-201ENST00000619963 541 ntBASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 AC012569.1-201ENST00000591191 1524 ntBASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL3Q8IVW4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 LINC01144-201ENST00000626198 1710 ntBASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 AL450487.1-201ENST00000426799 995 ntBASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 POU5F1P6-201ENST00000466990 990 ntBASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 AC092910.1-201ENST00000482027 1129 ntBASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 OR7E47P-204ENST00000575924 449 ntBASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CDKL3Q8IVW4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDKL3Q8IVW4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms