Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.38■□□□□ 0.21
PKNOX1P55347 FOSL1P1-201ENST00000511041 816 ntBASIC16.38■□□□□ 0.21
PKNOX1P55347 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.38■□□□□ 0.21
PKNOX1P55347 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.38■□□□□ 0.21
PKNOX1P55347 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.38■□□□□ 0.21
PKNOX1P55347 AC093458.2-201ENST00000623150 629 ntBASIC16.38■□□□□ 0.21
PKNOX1P55347 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.38■□□□□ 0.21
PKNOX1P55347 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PKNOX1P55347 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.38■□□□□ 0.21
PKNOX1P55347 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 AC023824.1-201ENST00000562945 2975 ntBASIC16.38■□□□□ 0.21
PKNOX1P55347 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PKNOX1P55347 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 ME2P1-201ENST00000426028 1970 ntBASIC16.37■□□□□ 0.21
PKNOX1P55347 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.37■□□□□ 0.21
PKNOX1P55347 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PKNOX1P55347 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.37■□□□□ 0.21
PKNOX1P55347 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 ARMC10P1-201ENST00000313754 855 ntBASIC16.37■□□□□ 0.21
PKNOX1P55347 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.37■□□□□ 0.21
PKNOX1P55347 PAWRP1-201ENST00000451083 565 ntBASIC16.37■□□□□ 0.21
PKNOX1P55347 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
PKNOX1P55347 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.37■□□□□ 0.21
PKNOX1P55347 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PKNOX1P55347 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.37■□□□□ 0.21
PKNOX1P55347 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.37■□□□□ 0.21
PKNOX1P55347 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AC144831.1-201ENST00000573312 2656 ntBASIC16.36■□□□□ 0.21
PKNOX1P55347 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PKNOX1P55347 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AC139887.3-201ENST00000568585 713 ntBASIC16.36■□□□□ 0.21
PKNOX1P55347 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.36■□□□□ 0.21
PKNOX1P55347 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.36■□□□□ 0.21
PKNOX1P55347 MTDHP3-201ENST00000594186 672 ntBASIC16.36■□□□□ 0.21
PKNOX1P55347 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AL732292.2-201ENST00000609649 430 ntBASIC16.36■□□□□ 0.21
PKNOX1P55347 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.36■□□□□ 0.21
PKNOX1P55347 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.36■□□□□ 0.21
PKNOX1P55347 AC005052.1-201ENST00000625181 2492 ntBASIC16.36■□□□□ 0.21
PKNOX1P55347 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms