Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KRT18P34-201ENST00000488218 1270 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.97■□□□□ 0.31
COL9A1P20849 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.97■□□□□ 0.31
COL9A1P20849 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.97■□□□□ 0.31
COL9A1P20849 AC091167.2-201ENST00000579581 588 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 AL589739.1-201ENST00000607720 493 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 AL022328.3-201ENST00000607943 679 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 AL033527.5-201ENST00000641382 801 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.97■□□□□ 0.31
COL9A1P20849 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.96■□□□□ 0.31
COL9A1P20849 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
COL9A1P20849 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL9A1P20849 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL9A1P20849 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.96■□□□□ 0.31
COL9A1P20849 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 USP32P1-208ENST00000506594 1164 ntBASIC16.96■□□□□ 0.31
COL9A1P20849 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.96■□□□□ 0.31
COL9A1P20849 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.96■□□□□ 0.31
COL9A1P20849 AC010328.2-201ENST00000597698 1111 ntBASIC16.96■□□□□ 0.31
COL9A1P20849 AC233724.13-201ENST00000598383 410 ntBASIC16.96■□□□□ 0.31
COL9A1P20849 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.96■□□□□ 0.31
COL9A1P20849 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL9A1P20849 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL9A1P20849 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
COL9A1P20849 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL9A1P20849 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.96■□□□□ 0.3
COL9A1P20849 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
COL9A1P20849 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 AC016027.1-202ENST00000607927 1699 ntBASIC16.95■□□□□ 0.3
COL9A1P20849 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.95■□□□□ 0.3
COL9A1P20849 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 AL035456.1-201ENST00000456064 1369 ntBASIC16.95■□□□□ 0.3
COL9A1P20849 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 HCG24-202ENST00000414398 717 ntTSL 3 BASIC16.95■□□□□ 0.3
COL9A1P20849 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.95■□□□□ 0.3
COL9A1P20849 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.95■□□□□ 0.3
COL9A1P20849 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.95■□□□□ 0.3
COL9A1P20849 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.95■□□□□ 0.3
COL9A1P20849 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.95■□□□□ 0.3
COL9A1P20849 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.95■□□□□ 0.3
COL9A1P20849 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
COL9A1P20849 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL9A1P20849 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.95■□□□□ 0.3
COL9A1P20849 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms