Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.61■□□□□ 0.25
PHGDHO43175 PMS2P1-201ENST00000431037 1228 ntBASIC16.61■□□□□ 0.25
PHGDHO43175 SAPCD2P3-201ENST00000455031 850 ntBASIC16.61■□□□□ 0.25
PHGDHO43175 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.61■□□□□ 0.25
PHGDHO43175 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.61■□□□□ 0.25
PHGDHO43175 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.61■□□□□ 0.25
PHGDHO43175 AL805961.1-202ENST00000641562 540 ntBASIC16.61■□□□□ 0.25
PHGDHO43175 AF228730.7-201ENST00000641842 219 ntBASIC16.61■□□□□ 0.25
PHGDHO43175 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.61■□□□□ 0.25
PHGDHO43175 GGT4P-201ENST00000623672 1708 ntBASIC16.61■□□□□ 0.25
PHGDHO43175 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.61■□□□□ 0.25
PHGDHO43175 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
PHGDHO43175 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.61■□□□□ 0.25
PHGDHO43175 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.61■□□□□ 0.25
PHGDHO43175 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHGDHO43175 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 SLC22A20-204ENST00000530038 1673 ntBASIC16.6■□□□□ 0.25
PHGDHO43175 AC131009.4-201ENST00000624048 1740 ntBASIC16.6■□□□□ 0.25
PHGDHO43175 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.6■□□□□ 0.25
PHGDHO43175 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.6■□□□□ 0.25
PHGDHO43175 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.6■□□□□ 0.25
PHGDHO43175 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.6■□□□□ 0.25
PHGDHO43175 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.6■□□□□ 0.25
PHGDHO43175 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PHGDHO43175 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.6■□□□□ 0.25
PHGDHO43175 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.6■□□□□ 0.25
PHGDHO43175 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PHGDHO43175 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
PHGDHO43175 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.59■□□□□ 0.25
PHGDHO43175 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.59■□□□□ 0.25
PHGDHO43175 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.59■□□□□ 0.25
PHGDHO43175 LAGE3P1-201ENST00000425356 484 ntBASIC16.59■□□□□ 0.25
PHGDHO43175 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.59■□□□□ 0.25
PHGDHO43175 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.59■□□□□ 0.25
PHGDHO43175 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.59■□□□□ 0.25
PHGDHO43175 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.59■□□□□ 0.25
PHGDHO43175 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PHGDHO43175 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PHGDHO43175 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.59■□□□□ 0.25
PHGDHO43175 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms