Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC105233.2-201ENST00000523697 349 ntBASIC18.62■□□□□ 0.57
MSH4O15457 AF228730.5-201ENST00000530288 346 ntBASIC18.62■□□□□ 0.57
MSH4O15457 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
MSH4O15457 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.62■□□□□ 0.57
MSH4O15457 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.62■□□□□ 0.57
MSH4O15457 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.62■□□□□ 0.57
MSH4O15457 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.62■□□□□ 0.57
MSH4O15457 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
MSH4O15457 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH4O15457 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
MSH4O15457 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MSH4O15457 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH4O15457 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH4O15457 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MSH4O15457 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH4O15457 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 ALOX12P2-203ENST00000570921 1945 ntBASIC18.61■□□□□ 0.57
MSH4O15457 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH4O15457 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH4O15457 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MSH4O15457 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 TSEN15P1-201ENST00000423257 515 ntBASIC18.61■□□□□ 0.57
MSH4O15457 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH4O15457 METTL21AP1-201ENST00000438852 635 ntBASIC18.61■□□□□ 0.57
MSH4O15457 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH4O15457 HLA-J-203ENST00000494367 1087 ntBASIC18.61■□□□□ 0.57
MSH4O15457 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 AC109322.1-201ENST00000524499 1264 ntBASIC18.61■□□□□ 0.57
MSH4O15457 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH4O15457 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH4O15457 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.61■□□□□ 0.57
MSH4O15457 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
MSH4O15457 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH4O15457 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH4O15457 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.6■□□□□ 0.57
MSH4O15457 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.6■□□□□ 0.57
MSH4O15457 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.6■□□□□ 0.57
MSH4O15457 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.6■□□□□ 0.57
MSH4O15457 AC093724.1-201ENST00000448659 1027 ntBASIC18.6■□□□□ 0.57
MSH4O15457 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.6■□□□□ 0.57
MSH4O15457 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.6■□□□□ 0.57
MSH4O15457 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.6■□□□□ 0.57
MSH4O15457 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.6■□□□□ 0.57
MSH4O15457 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.6■□□□□ 0.57
MSH4O15457 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.6■□□□□ 0.57
MSH4O15457 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.6■□□□□ 0.57
MSH4O15457 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.6■□□□□ 0.57
MSH4O15457 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH4O15457 AC005052.1-201ENST00000625181 2492 ntBASIC18.6■□□□□ 0.57
MSH4O15457 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
MSH4O15457 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.6■□□□□ 0.57
MSH4O15457 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
MSH4O15457 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.59■□□□□ 0.57
MSH4O15457 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.59■□□□□ 0.57
MSH4O15457 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.59■□□□□ 0.57
MSH4O15457 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH4O15457 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MSH4O15457 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms