Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.06■□□□□ 0.16
SLC28A1O00337 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.06■□□□□ 0.16
SLC28A1O00337 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 AC005412.3-201ENST00000580309 715 ntBASIC16.06■□□□□ 0.16
SLC28A1O00337 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.06■□□□□ 0.16
SLC28A1O00337 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.06■□□□□ 0.16
SLC28A1O00337 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.06■□□□□ 0.16
SLC28A1O00337 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.06■□□□□ 0.16
SLC28A1O00337 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.06■□□□□ 0.16
SLC28A1O00337 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
SLC28A1O00337 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.06■□□□□ 0.16
SLC28A1O00337 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SLC28A1O00337 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SLC28A1O00337 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 GPAA1P2-202ENST00000606848 1787 ntBASIC16.05■□□□□ 0.16
SLC28A1O00337 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SLC28A1O00337 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.05■□□□□ 0.16
SLC28A1O00337 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 HCG4-201ENST00000418983 998 ntBASIC16.05■□□□□ 0.16
SLC28A1O00337 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.05■□□□□ 0.16
SLC28A1O00337 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SLC28A1O00337 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.05■□□□□ 0.16
SLC28A1O00337 AF238378.1-201ENST00000526806 358 ntBASIC16.05■□□□□ 0.16
SLC28A1O00337 AC107918.2-201ENST00000530817 355 ntBASIC16.05■□□□□ 0.16
SLC28A1O00337 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.05■□□□□ 0.16
SLC28A1O00337 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SLC28A1O00337 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 PCGF3-213ENST00000620529 1899 ntBASIC16.05■□□□□ 0.16
SLC28A1O00337 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.05■□□□□ 0.16
SLC28A1O00337 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SLC28A1O00337 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SLC28A1O00337 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC28A1O00337 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
SLC28A1O00337 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.04■□□□□ 0.16
SLC28A1O00337 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC28A1O00337 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC28A1O00337 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC28A1O00337 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC28A1O00337 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 AC008741.2-201ENST00000612792 3115 ntBASIC16.04■□□□□ 0.16
SLC28A1O00337 AC046158.3-201ENST00000624947 2558 ntBASIC16.04■□□□□ 0.16
SLC28A1O00337 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms