Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.17■□□□□ 0.66
R3HCC1Q9Y3T6 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 FAM220CP-201ENST00000395253 831 ntBASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AC096633.1-201ENST00000422446 749 ntBASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 DDX43P3-201ENST00000441064 443 ntBASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AL591684.3-201ENST00000605187 298 ntBASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AL691432.3-201ENST00000621860 400 ntBASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.16■□□□□ 0.66
R3HCC1Q9Y3T6 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 BX276092.7-203ENST00000637198 1536 ntBASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 BNIP3P18-201ENST00000593976 575 ntBASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 AC114341.1-201ENST00000618070 349 ntBASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 AC012313.10-201ENST00000623509 926 ntBASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 REXO1L11P-201ENST00000620964 1927 ntBASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 TNRC18P2-201ENST00000417666 2714 ntBASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
R3HCC1Q9Y3T6 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
R3HCC1Q9Y3T6 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
R3HCC1Q9Y3T6 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.14■□□□□ 0.66
R3HCC1Q9Y3T6 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 AC111152.3-201ENST00000569699 673 ntBASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
R3HCC1Q9Y3T6 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms