Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MTDHP3-201ENST00000594186 672 ntBASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AL139288.1-201ENST00000623748 933 ntBASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AC004817.3-201ENST00000602957 2129 ntBASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 LINC00982-205ENST00000420957 435 ntBASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 AL022326.1-202ENST00000641533 845 ntBASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC39Q9UFE4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC39Q9UFE4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC39Q9UFE4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC39Q9UFE4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CCDC39Q9UFE4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC39Q9UFE4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC39Q9UFE4 NKAPP1-205ENST00000585790 367 ntBASIC19.33■□□□□ 0.68
CCDC39Q9UFE4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms