Protein–RNA interactions for Protein: Q99732

LITAF, Lipopolysaccharide-induced tumor necrosis factor-alpha factor, humanhuman

Predictions only

Length 161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LITAFQ99732 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
LITAFQ99732 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
LITAFQ99732 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC11.1□□□□□ -0.63
LITAFQ99732 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
LITAFQ99732 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
LITAFQ99732 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LITAFQ99732 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC11.09□□□□□ -0.63
LITAFQ99732 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
LITAFQ99732 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC11.09□□□□□ -0.63
LITAFQ99732 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 HNRNPRP1-201ENST00000453465 1695 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 AC003669.1-201ENST00000334569 611 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 AP000523.1-201ENST00000398242 1049 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
LITAFQ99732 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC11.09□□□□□ -0.63
LITAFQ99732 APTR-205ENST00000447009 902 ntTSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC11.09□□□□□ -0.63
LITAFQ99732 RBM17P1-201ENST00000453646 1190 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC11.09□□□□□ -0.63
LITAFQ99732 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 PENK-204ENST00000518770 863 ntTSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 CD81-212ENST00000526072 1172 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 FITM1-202ENST00000559294 800 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 C2orf69P3-201ENST00000565542 1120 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 AL512604.3-201ENST00000569583 964 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 LITAF-220ENST00000620789 692 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 AC139749.1-202ENST00000617529 3139 ntBASIC11.09□□□□□ -0.63
LITAFQ99732 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 RER1-203ENST00000378513 3000 ntTSL 3 BASIC11.09□□□□□ -0.63
LITAFQ99732 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC11.09□□□□□ -0.63
LITAFQ99732 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
LITAFQ99732 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LITAFQ99732 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
LITAFQ99732 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
LITAFQ99732 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.08□□□□□ -0.63
LITAFQ99732 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
LITAFQ99732 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
LITAFQ99732 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LITAFQ99732 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
LITAFQ99732 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
LITAFQ99732 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
LITAFQ99732 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC11.08□□□□□ -0.64
LITAFQ99732 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
LITAFQ99732 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC11.08□□□□□ -0.64
LITAFQ99732 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms