Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDX2Q99626 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX2Q99626 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDX2Q99626 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 AC120498.9-201ENST00000339021 3867 ntBASIC17.12■□□□□ 0.33
CDX2Q99626 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDX2Q99626 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CDX2Q99626 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX2Q99626 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX2Q99626 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CDX2Q99626 SOCS2P1-201ENST00000417727 557 ntBASIC17.12■□□□□ 0.33
CDX2Q99626 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
CDX2Q99626 FAM86LP-201ENST00000478302 853 ntBASIC17.12■□□□□ 0.33
CDX2Q99626 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.12■□□□□ 0.33
CDX2Q99626 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.12■□□□□ 0.33
CDX2Q99626 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC17.12■□□□□ 0.33
CDX2Q99626 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX2Q99626 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.12■□□□□ 0.33
CDX2Q99626 MSTO2P-201ENST00000314835 1709 ntBASIC17.12■□□□□ 0.33
CDX2Q99626 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX2Q99626 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX2Q99626 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX2Q99626 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.11■□□□□ 0.33
CDX2Q99626 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX2Q99626 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDX2Q99626 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX2Q99626 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX2Q99626 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDX2Q99626 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.11■□□□□ 0.33
CDX2Q99626 AC134915.1-201ENST00000426461 574 ntBASIC17.11■□□□□ 0.33
CDX2Q99626 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX2Q99626 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 AC008267.1-201ENST00000474858 1069 ntBASIC17.11■□□□□ 0.33
CDX2Q99626 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDX2Q99626 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX2Q99626 AC124283.3-201ENST00000570869 594 ntBASIC17.11■□□□□ 0.33
CDX2Q99626 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.11■□□□□ 0.33
CDX2Q99626 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.11■□□□□ 0.33
CDX2Q99626 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.11■□□□□ 0.33
CDX2Q99626 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.11■□□□□ 0.33
CDX2Q99626 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX2Q99626 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX2Q99626 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 LINC00304-203ENST00000565008 1864 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.1■□□□□ 0.33
CDX2Q99626 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.1■□□□□ 0.33
CDX2Q99626 HIST3H2BA-201ENST00000436555 524 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 MAGEA5-201ENST00000446757 942 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 FTLP1-201ENST00000449155 526 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.1■□□□□ 0.33
CDX2Q99626 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.1■□□□□ 0.33
CDX2Q99626 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms