Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 PI4KAP1-204ENST00000612579 1703 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 PTCHD3P3-201ENST00000403073 906 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 PAWRP1-201ENST00000451083 565 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AC087163.2-201ENST00000457299 853 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 REXO1L6P-202ENST00000619970 1078 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AC004706.3-202ENST00000621574 984 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SNX33P1-201ENST00000592116 1762 ntBASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLHC1Q8NHS4 AC006504.4-201ENST00000592118 1568 ntBASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 AC002310.6-201ENST00000624451 1377 ntBASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 HYMAI-201ENST00000635591 3347 ntBASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 AC025062.2-201ENST00000605477 670 ntBASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLHC1Q8NHS4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms