Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 AC079781.4-201ENST00000641908 219 ntBASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.51■□□□□ 0.39
SCUBE3Q8IX30 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 GGT4P-201ENST00000623672 1708 ntBASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 UPF3AP3-201ENST00000420996 769 ntBASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 MIR3909-201ENST00000579518 119 ntBASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AP001160.2-201ENST00000596071 487 ntBASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AC091812.2-201ENST00000619081 385 ntBASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 AC005052.1-201ENST00000625181 2492 ntBASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.5■□□□□ 0.39
SCUBE3Q8IX30 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 FAM58CP-201ENST00000435741 640 ntBASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 AC017007.3-201ENST00000479865 435 ntBASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 AC109635.5-201ENST00000533593 962 ntBASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 AC021097.1-201ENST00000607902 574 ntBASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 AL078644.1-201ENST00000609881 752 ntBASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 C20orf181-201ENST00000623918 480 ntBASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SCUBE3Q8IX30 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.48■□□□□ 0.39
SCUBE3Q8IX30 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SCUBE3Q8IX30 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SCUBE3Q8IX30 GPAA1P2-202ENST00000606848 1787 ntBASIC17.48■□□□□ 0.39
SCUBE3Q8IX30 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SCUBE3Q8IX30 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SCUBE3Q8IX30 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms