Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
FOXA1P55317 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 REXO1L8P-201ENST00000604378 1897 ntBASIC16.16■□□□□ 0.18
FOXA1P55317 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
FOXA1P55317 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA1P55317 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
FOXA1P55317 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 GPAA1P2-202ENST00000606848 1787 ntBASIC16.15■□□□□ 0.18
FOXA1P55317 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA1P55317 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.15■□□□□ 0.18
FOXA1P55317 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.15■□□□□ 0.18
FOXA1P55317 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
FOXA1P55317 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
FOXA1P55317 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.15■□□□□ 0.18
FOXA1P55317 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.15■□□□□ 0.18
FOXA1P55317 LAGE3P1-201ENST00000425356 484 ntBASIC16.15■□□□□ 0.18
FOXA1P55317 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.15■□□□□ 0.18
FOXA1P55317 SAPCD2P3-201ENST00000455031 850 ntBASIC16.15■□□□□ 0.18
FOXA1P55317 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.15■□□□□ 0.18
FOXA1P55317 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA1P55317 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA1P55317 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.15■□□□□ 0.18
FOXA1P55317 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA1P55317 AC107918.4-202ENST00000641623 219 ntBASIC16.15■□□□□ 0.18
FOXA1P55317 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
FOXA1P55317 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
FOXA1P55317 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.15■□□□□ 0.18
FOXA1P55317 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.15■□□□□ 0.18
FOXA1P55317 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA1P55317 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXA1P55317 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXA1P55317 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 AC073621.1-201ENST00000392730 636 ntBASIC16.14■□□□□ 0.17
FOXA1P55317 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.14■□□□□ 0.17
FOXA1P55317 KRT18P27-201ENST00000427733 1299 ntBASIC16.14■□□□□ 0.17
FOXA1P55317 RPS15P9-201ENST00000494093 319 ntBASIC16.14■□□□□ 0.17
FOXA1P55317 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXA1P55317 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXA1P55317 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXA1P55317 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXA1P55317 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.14■□□□□ 0.17
FOXA1P55317 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXA1P55317 PCGF3-213ENST00000620529 1899 ntBASIC16.14■□□□□ 0.17
FOXA1P55317 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
FOXA1P55317 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA1P55317 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXA1P55317 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
FOXA1P55317 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms