Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 BMF-207ENST00000559701 630 ntTSL 3 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 NKAPP1-205ENST00000585790 367 ntBASIC12.76□□□□□ -0.37
HLA-DMBP28068 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 TERC-201ENST00000602385 541 ntBASIC12.76□□□□□ -0.37
HLA-DMBP28068 IGHV3OR16-7-201ENST00000604106 360 ntBASIC12.76□□□□□ -0.37
HLA-DMBP28068 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 KRT8P49-201ENST00000604166 1432 ntBASIC12.76□□□□□ -0.37
HLA-DMBP28068 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 LINC00895-201ENST00000629028 1637 ntBASIC12.76□□□□□ -0.37
HLA-DMBP28068 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 LSM5-204ENST00000409909 740 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AL513523.2-202ENST00000427283 2040 ntBASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC079781.3-201ENST00000449110 356 ntBASIC12.75□□□□□ -0.37
HLA-DMBP28068 SAPCD2P3-201ENST00000455031 850 ntBASIC12.75□□□□□ -0.37
HLA-DMBP28068 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AL160237.2-201ENST00000556165 472 ntBASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC006538.1-201ENST00000567905 1585 ntBASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AL121912.1-201ENST00000603683 238 ntBASIC12.75□□□□□ -0.37
HLA-DMBP28068 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DMBP28068 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DMBP28068 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
HLA-DMBP28068 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms