Protein–RNA interactions for Protein: P23469

PTPRE, Receptor-type tyrosine-protein phosphatase epsilon, humanhuman

Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPREP23469 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPREP23469 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PTPREP23469 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPREP23469 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPREP23469 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPREP23469 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPREP23469 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPREP23469 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPREP23469 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPREP23469 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PTPREP23469 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPREP23469 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPREP23469 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PTPREP23469 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPREP23469 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PTPREP23469 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.41■□□□□ 0.7
PTPREP23469 AC244107.1-201ENST00000442033 332 ntBASIC19.41■□□□□ 0.7
PTPREP23469 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.41■□□□□ 0.7
PTPREP23469 AL009183.1-201ENST00000603760 355 ntBASIC19.41■□□□□ 0.7
PTPREP23469 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.41■□□□□ 0.7
PTPREP23469 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PTPREP23469 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPREP23469 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
PTPREP23469 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
PTPREP23469 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.41■□□□□ 0.7
PTPREP23469 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PTPREP23469 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PTPREP23469 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPREP23469 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.4■□□□□ 0.7
PTPREP23469 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPREP23469 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPREP23469 KRT8P23-201ENST00000560090 1207 ntBASIC19.4■□□□□ 0.7
PTPREP23469 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.4■□□□□ 0.7
PTPREP23469 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPREP23469 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPREP23469 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTPREP23469 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
PTPREP23469 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTPREP23469 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTPREP23469 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTPREP23469 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTPREP23469 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPREP23469 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPREP23469 AL645728.1-201ENST00000366221 2101 ntBASIC19.39■□□□□ 0.69
PTPREP23469 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPREP23469 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPREP23469 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
PTPREP23469 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.39■□□□□ 0.69
PTPREP23469 AC107890.1-201ENST00000422478 521 ntBASIC19.39■□□□□ 0.69
PTPREP23469 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.39■□□□□ 0.69
PTPREP23469 IGHV3-62-201ENST00000520057 340 ntBASIC19.39■□□□□ 0.69
PTPREP23469 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
PTPREP23469 AC026150.2-201ENST00000564693 1156 ntBASIC19.39■□□□□ 0.69
PTPREP23469 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.39■□□□□ 0.69
PTPREP23469 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPREP23469 AF228730.6-201ENST00000641497 218 ntBASIC19.39■□□□□ 0.69
PTPREP23469 AC084121.4-201ENST00000641598 221 ntBASIC19.39■□□□□ 0.69
PTPREP23469 AC084121.3-201ENST00000641716 218 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms