Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A2P12110 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A2P12110 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL6A2P12110 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A2P12110 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A2P12110 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A2P12110 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A2P12110 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 FGFR3P6-201ENST00000457012 610 ntBASIC16.5■□□□□ 0.23
COL6A2P12110 SART3-203ENST00000546611 1184 ntBASIC16.5■□□□□ 0.23
COL6A2P12110 CYP2A7P1-201ENST00000595391 815 ntBASIC16.5■□□□□ 0.23
COL6A2P12110 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 AP001350.2-201ENST00000625104 1094 ntBASIC16.5■□□□□ 0.23
COL6A2P12110 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.5■□□□□ 0.23
COL6A2P12110 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A2P12110 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL6A2P12110 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 PCGF3-213ENST00000620529 1899 ntBASIC16.5■□□□□ 0.23
COL6A2P12110 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A2P12110 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A2P12110 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL6A2P12110 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 ARMC10P1-201ENST00000313754 855 ntBASIC16.49■□□□□ 0.23
COL6A2P12110 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
COL6A2P12110 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.49■□□□□ 0.23
COL6A2P12110 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 SLC25A6P2-201ENST00000497974 877 ntBASIC16.49■□□□□ 0.23
COL6A2P12110 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.49■□□□□ 0.23
COL6A2P12110 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A2P12110 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 AL603832.2-201ENST00000566195 2125 ntBASIC16.49■□□□□ 0.23
COL6A2P12110 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.49■□□□□ 0.23
COL6A2P12110 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.49■□□□□ 0.23
COL6A2P12110 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A2P12110 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A2P12110 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A2P12110 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A2P12110 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A2P12110 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A2P12110 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
COL6A2P12110 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL6A2P12110 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL6A2P12110 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A2P12110 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A2P12110 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A2P12110 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.48■□□□□ 0.23
COL6A2P12110 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A2P12110 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL6A2P12110 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A2P12110 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A2P12110 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms