Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.44■□□□□ 0.54
TPM1P09493 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 KRT8P49-201ENST00000604166 1432 ntBASIC18.44■□□□□ 0.54
TPM1P09493 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.44■□□□□ 0.54
TPM1P09493 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 NUS1P1-201ENST00000446295 882 ntBASIC18.44■□□□□ 0.54
TPM1P09493 AC022616.7-201ENST00000525383 220 ntBASIC18.44■□□□□ 0.54
TPM1P09493 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.44■□□□□ 0.54
TPM1P09493 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.44■□□□□ 0.54
TPM1P09493 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.44■□□□□ 0.54
TPM1P09493 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.44■□□□□ 0.54
TPM1P09493 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
TPM1P09493 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
TPM1P09493 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
TPM1P09493 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.44■□□□□ 0.54
TPM1P09493 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TPM1P09493 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TPM1P09493 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.43■□□□□ 0.54
TPM1P09493 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.43■□□□□ 0.54
TPM1P09493 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.43■□□□□ 0.54
TPM1P09493 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.43■□□□□ 0.54
TPM1P09493 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
TPM1P09493 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.43■□□□□ 0.54
TPM1P09493 DUX4L17-201ENST00000557360 1267 ntBASIC18.43■□□□□ 0.54
TPM1P09493 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.43■□□□□ 0.54
TPM1P09493 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.43■□□□□ 0.54
TPM1P09493 AL139011.1-202ENST00000642063 584 ntBASIC18.43■□□□□ 0.54
TPM1P09493 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.43■□□□□ 0.54
TPM1P09493 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.43■□□□□ 0.54
TPM1P09493 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.43■□□□□ 0.54
TPM1P09493 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
TPM1P09493 PMPCAP1-201ENST00000508114 1576 ntBASIC18.42■□□□□ 0.54
TPM1P09493 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 AC097637.2-201ENST00000624096 1997 ntBASIC18.42■□□□□ 0.54
TPM1P09493 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.42■□□□□ 0.54
TPM1P09493 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.42■□□□□ 0.54
TPM1P09493 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.42■□□□□ 0.54
TPM1P09493 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.42■□□□□ 0.54
TPM1P09493 AC092384.3-202ENST00000564646 2873 ntBASIC18.42■□□□□ 0.54
TPM1P09493 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.42■□□□□ 0.54
TPM1P09493 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TPM1P09493 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.42■□□□□ 0.54
TPM1P09493 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TPM1P09493 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.42■□□□□ 0.54
TPM1P09493 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.42■□□□□ 0.54
TPM1P09493 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.42■□□□□ 0.54
TPM1P09493 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.42■□□□□ 0.54
TPM1P09493 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TPM1P09493 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms