Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC092329.2-201ENST00000598402 547 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 PMPCAP1-201ENST00000508114 1576 ntBASIC14.63□□□□□ -0.07
NKX3-1Q99801 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX3-1Q99801 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX3-1Q99801 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 NSUN5P1-202ENST00000421140 1535 ntBASIC14.62□□□□□ -0.07
NKX3-1Q99801 NSUN5P2-203ENST00000457352 1529 ntBASIC14.62□□□□□ -0.07
NKX3-1Q99801 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 TPSP2-201ENST00000561760 610 ntBASIC14.62□□□□□ -0.07
NKX3-1Q99801 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 AP002414.4-201ENST00000589764 1148 ntBASIC14.62□□□□□ -0.07
NKX3-1Q99801 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX3-1Q99801 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX3-1Q99801 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 AC105917.1-201ENST00000506637 2539 ntBASIC14.61□□□□□ -0.07
NKX3-1Q99801 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX3-1Q99801 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.61□□□□□ -0.07
NKX3-1Q99801 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms