Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AL645728.1-201ENST00000366221 2101 ntBASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 LINC00895-201ENST00000629028 1637 ntBASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTCHD1Q96NR3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 FLJ38576-201ENST00000623820 2459 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 RNF216P1-203ENST00000404404 2427 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 RNU1-129P-201ENST00000384064 167 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 CEND1P1-201ENST00000451006 455 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 U1.21-201ENST00000580816 167 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 AL031055.1-201ENST00000606362 631 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 GPALPP1-207ENST00000611650 899 ntBASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTCHD1Q96NR3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PTCHD1Q96NR3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms