Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC21.7■■□□□ 1.06
RTF1Q92541 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.7■■□□□ 1.06
RTF1Q92541 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.7■■□□□ 1.06
RTF1Q92541 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.7■■□□□ 1.06
RTF1Q92541 AC073389.1-201ENST00000595595 795 ntBASIC21.7■■□□□ 1.06
RTF1Q92541 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.7■■□□□ 1.06
RTF1Q92541 TUBB3P1-201ENST00000405796 1332 ntBASIC21.7■■□□□ 1.06
RTF1Q92541 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
RTF1Q92541 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.7■■□□□ 1.06
RTF1Q92541 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
RTF1Q92541 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.7■■□□□ 1.06
RTF1Q92541 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
RTF1Q92541 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.7■■□□□ 1.06
RTF1Q92541 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
RTF1Q92541 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.69■■□□□ 1.06
RTF1Q92541 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.69■■□□□ 1.06
RTF1Q92541 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.69■■□□□ 1.06
RTF1Q92541 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.69■■□□□ 1.06
RTF1Q92541 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 AC142381.1-201ENST00000426099 345 ntBASIC21.69■■□□□ 1.06
RTF1Q92541 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.69■■□□□ 1.06
RTF1Q92541 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.69■■□□□ 1.06
RTF1Q92541 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.69■■□□□ 1.06
RTF1Q92541 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.69■■□□□ 1.06
RTF1Q92541 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.69■■□□□ 1.06
RTF1Q92541 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
RTF1Q92541 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
RTF1Q92541 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
RTF1Q92541 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
RTF1Q92541 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
RTF1Q92541 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC21.69■■□□□ 1.06
RTF1Q92541 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RTF1Q92541 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC21.68■■□□□ 1.06
RTF1Q92541 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RTF1Q92541 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.68■■□□□ 1.06
RTF1Q92541 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.68■■□□□ 1.06
RTF1Q92541 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC21.68■■□□□ 1.06
RTF1Q92541 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 AC008677.1-201ENST00000519230 1561 ntBASIC21.68■■□□□ 1.06
RTF1Q92541 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC21.68■■□□□ 1.06
RTF1Q92541 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
RTF1Q92541 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.68■■□□□ 1.06
RTF1Q92541 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
RTF1Q92541 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RTF1Q92541 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.67■■□□□ 1.06
RTF1Q92541 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.67■■□□□ 1.06
RTF1Q92541 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 AC073439.1-201ENST00000624121 1774 ntBASIC21.67■■□□□ 1.06
RTF1Q92541 AL512652.2-201ENST00000625156 1716 ntBASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms