Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.61■■□□□ 1.05
COL18A1P39060 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL18A1P39060 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC21.61■■□□□ 1.05
COL18A1P39060 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC21.61■■□□□ 1.05
COL18A1P39060 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC21.61■■□□□ 1.05
COL18A1P39060 BRI3BPP1-201ENST00000594224 787 ntBASIC21.61■■□□□ 1.05
COL18A1P39060 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC21.61■■□□□ 1.05
COL18A1P39060 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.61■■□□□ 1.05
COL18A1P39060 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.6■■□□□ 1.05
COL18A1P39060 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL18A1P39060 AMT-232ENST00000636199 1546 ntTSL 5 BASIC21.6■■□□□ 1.05
COL18A1P39060 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL18A1P39060 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.6■■□□□ 1.05
COL18A1P39060 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
COL18A1P39060 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL18A1P39060 NOC2LP2-201ENST00000407594 1944 ntBASIC21.6■■□□□ 1.05
COL18A1P39060 USB1-203ENST00000539737 1212 ntTSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC21.6■■□□□ 1.05
COL18A1P39060 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL18A1P39060 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL18A1P39060 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL18A1P39060 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
COL18A1P39060 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
COL18A1P39060 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC21.59■■□□□ 1.05
COL18A1P39060 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC21.59■■□□□ 1.05
COL18A1P39060 SUOX-214ENST00000551841 906 ntTSL 3 BASIC21.59■■□□□ 1.05
COL18A1P39060 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC21.59■■□□□ 1.05
COL18A1P39060 MIR4538-201ENST00000581377 78 ntBASIC21.59■■□□□ 1.05
COL18A1P39060 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC21.59■■□□□ 1.05
COL18A1P39060 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC21.59■■□□□ 1.05
COL18A1P39060 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
COL18A1P39060 AL033527.5-201ENST00000641382 801 ntBASIC21.59■■□□□ 1.05
COL18A1P39060 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
COL18A1P39060 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
COL18A1P39060 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC21.59■■□□□ 1.05
COL18A1P39060 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.59■■□□□ 1.05
COL18A1P39060 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
COL18A1P39060 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.59■■□□□ 1.05
COL18A1P39060 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.59■■□□□ 1.05
COL18A1P39060 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC21.59■■□□□ 1.05
COL18A1P39060 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC21.59■■□□□ 1.05
COL18A1P39060 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC21.59■■□□□ 1.05
COL18A1P39060 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL18A1P39060 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC21.59■■□□□ 1.05
COL18A1P39060 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
COL18A1P39060 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL18A1P39060 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL18A1P39060 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC21.58■■□□□ 1.05
COL18A1P39060 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL18A1P39060 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.58■■□□□ 1.05
COL18A1P39060 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC21.58■■□□□ 1.05
COL18A1P39060 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
COL18A1P39060 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC21.58■■□□□ 1.04
COL18A1P39060 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC21.58■■□□□ 1.04
COL18A1P39060 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC21.58■■□□□ 1.04
COL18A1P39060 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 TECR-220ENST00000600083 1204 ntTSL 2 BASIC21.58■■□□□ 1.04
COL18A1P39060 RPS24-214ENST00000613865 538 ntTSL 5 BASIC21.58■■□□□ 1.04
COL18A1P39060 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC21.58■■□□□ 1.04
COL18A1P39060 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 AC060834.1-201ENST00000443027 2032 ntBASIC21.58■■□□□ 1.04
COL18A1P39060 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.58■■□□□ 1.04
COL18A1P39060 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL18A1P39060 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
COL18A1P39060 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL18A1P39060 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.57■■□□□ 1.04
COL18A1P39060 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms