Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.61□□□□□ -0.39
HLA-DQA1P01909 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AC007292.2-201ENST00000593524 1812 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 MESTP1-201ENST00000404287 994 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 GRAMD4P1-201ENST00000435181 1110 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AC116562.2-201ENST00000507042 360 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 ETFA-216ENST00000560726 942 ntTSL 3 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AP000525.1-201ENST00000608286 694 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms