Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SEMA3DO95025 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SEMA3DO95025 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.03■□□□□ 0.16
SEMA3DO95025 SNX33P1-201ENST00000592116 1762 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.03■□□□□ 0.16
SEMA3DO95025 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 SLC22A20-204ENST00000530038 1673 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.03■□□□□ 0.16
SEMA3DO95025 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.03■□□□□ 0.16
SEMA3DO95025 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SEMA3DO95025 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 PRSS29P-201ENST00000440800 595 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 AC093909.1-201ENST00000504731 1122 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 RNA5SP419-201ENST00000515908 135 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 AC087641.1-201ENST00000557561 1021 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.03■□□□□ 0.16
SEMA3DO95025 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.03■□□□□ 0.16
SEMA3DO95025 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.03■□□□□ 0.16
SEMA3DO95025 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SEMA3DO95025 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.03■□□□□ 0.16
SEMA3DO95025 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.03■□□□□ 0.16
SEMA3DO95025 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.03■□□□□ 0.16
SEMA3DO95025 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SEMA3DO95025 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SEMA3DO95025 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SEMA3DO95025 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.02■□□□□ 0.16
SEMA3DO95025 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 PMS2P1-201ENST00000431037 1228 ntBASIC16.02■□□□□ 0.16
SEMA3DO95025 AC092910.1-201ENST00000482027 1129 ntBASIC16.02■□□□□ 0.16
SEMA3DO95025 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 OR7E47P-204ENST00000575924 449 ntBASIC16.02■□□□□ 0.16
SEMA3DO95025 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SEMA3DO95025 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SEMA3DO95025 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SEMA3DO95025 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.02■□□□□ 0.15
SEMA3DO95025 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.02■□□□□ 0.15
SEMA3DO95025 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.02■□□□□ 0.15
SEMA3DO95025 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SEMA3DO95025 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SEMA3DO95025 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 PCDHA1-201ENST00000378133 2726 ntBASIC16.02■□□□□ 0.15
SEMA3DO95025 KRT8P39-201ENST00000396270 1433 ntBASIC16.02■□□□□ 0.15
SEMA3DO95025 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.02■□□□□ 0.15
SEMA3DO95025 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SEMA3DO95025 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SEMA3DO95025 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms