Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.09■■□□□ 1.29
PCDHGA11Q9Y5H2 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.08■■□□□ 1.29
PCDHGA11Q9Y5H2 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.08■■□□□ 1.28
PCDHGA11Q9Y5H2 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.07■■□□□ 1.28
PCDHGA11Q9Y5H2 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA11Q9Y5H2 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA11Q9Y5H2 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDHGA11Q9Y5H2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PCDHGA11Q9Y5H2 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 RNF126P1-201ENST00000567452 1320 ntBASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 AC097639.1-201ENST00000565519 1891 ntBASIC23.05■■□□□ 1.28
PCDHGA11Q9Y5H2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.04■■□□□ 1.28
PCDHGA11Q9Y5H2 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA11Q9Y5H2 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
PCDHGA11Q9Y5H2 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA11Q9Y5H2 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA11Q9Y5H2 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PCDHGA11Q9Y5H2 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA11Q9Y5H2 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA11Q9Y5H2 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA11Q9Y5H2 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PCDHGA11Q9Y5H2 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.02■■□□□ 1.28
PCDHGA11Q9Y5H2 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA11Q9Y5H2 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA11Q9Y5H2 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PCDHGA11Q9Y5H2 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
PCDHGA11Q9Y5H2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA11Q9Y5H2 RAP2CP1-202ENST00000605179 643 ntBASIC23.01■■□□□ 1.27
PCDHGA11Q9Y5H2 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
PCDHGA11Q9Y5H2 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA11Q9Y5H2 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PCDHGA11Q9Y5H2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA11Q9Y5H2 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA11Q9Y5H2 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
PCDHGA11Q9Y5H2 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA11Q9Y5H2 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23■■□□□ 1.27
PCDHGA11Q9Y5H2 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
PCDHGA11Q9Y5H2 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 AC026202.3-201ENST00000600805 1127 ntBASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHGA11Q9Y5H2 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHGA11Q9Y5H2 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHGA11Q9Y5H2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA11Q9Y5H2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
PCDHGA11Q9Y5H2 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA11Q9Y5H2 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA11Q9Y5H2 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHGA11Q9Y5H2 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.96■■□□□ 1.27
PCDHGA11Q9Y5H2 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
PCDHGA11Q9Y5H2 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA11Q9Y5H2 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA11Q9Y5H2 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.95■■□□□ 1.26
PCDHGA11Q9Y5H2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA11Q9Y5H2 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA11Q9Y5H2 AC142381.3-201ENST00000568208 1670 ntBASIC22.94■■□□□ 1.26
PCDHGA11Q9Y5H2 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms