Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.4■■□□□ 1.98
DDX41Q9UJV9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
DDX41Q9UJV9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.39■■□□□ 1.98
DDX41Q9UJV9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.39■■□□□ 1.97
DDX41Q9UJV9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.39■■□□□ 1.97
DDX41Q9UJV9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX41Q9UJV9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC27.38■■□□□ 1.97
DDX41Q9UJV9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX41Q9UJV9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX41Q9UJV9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.37■■□□□ 1.97
DDX41Q9UJV9 AC142472.1-201ENST00000612013 1741 ntBASIC27.36■■□□□ 1.97
DDX41Q9UJV9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 RPS2P7-201ENST00000447334 885 ntBASIC27.36■■□□□ 1.97
DDX41Q9UJV9 AC019171.1-201ENST00000601251 1056 ntBASIC27.36■■□□□ 1.97
DDX41Q9UJV9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.36■■□□□ 1.97
DDX41Q9UJV9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC27.35■■□□□ 1.97
DDX41Q9UJV9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
DDX41Q9UJV9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
DDX41Q9UJV9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
DDX41Q9UJV9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.34■■□□□ 1.97
DDX41Q9UJV9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
DDX41Q9UJV9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
DDX41Q9UJV9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
DDX41Q9UJV9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC27.33■■□□□ 1.97
DDX41Q9UJV9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
DDX41Q9UJV9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
DDX41Q9UJV9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX41Q9UJV9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC27.32■■□□□ 1.96
DDX41Q9UJV9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX41Q9UJV9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX41Q9UJV9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
DDX41Q9UJV9 AC009299.2-201ENST00000482477 511 ntBASIC27.32■■□□□ 1.96
DDX41Q9UJV9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC27.32■■□□□ 1.96
DDX41Q9UJV9 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
DDX41Q9UJV9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC27.31■■□□□ 1.96
DDX41Q9UJV9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
DDX41Q9UJV9 LONRF2P2-201ENST00000439212 571 ntBASIC27.31■■□□□ 1.96
DDX41Q9UJV9 AC103724.3-201ENST00000564481 992 ntBASIC27.31■■□□□ 1.96
DDX41Q9UJV9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
DDX41Q9UJV9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
DDX41Q9UJV9 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
DDX41Q9UJV9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
DDX41Q9UJV9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC27.3■■□□□ 1.96
DDX41Q9UJV9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
DDX41Q9UJV9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
DDX41Q9UJV9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
DDX41Q9UJV9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
DDX41Q9UJV9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC27.28■■□□□ 1.96
DDX41Q9UJV9 AC093323.1-202ENST00000635031 2045 ntBASIC27.28■■□□□ 1.96
DDX41Q9UJV9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
DDX41Q9UJV9 AP004609.3-201ENST00000610705 1884 ntBASIC27.27■■□□□ 1.96
DDX41Q9UJV9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX41Q9UJV9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX41Q9UJV9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC27.27■■□□□ 1.96
DDX41Q9UJV9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX41Q9UJV9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX41Q9UJV9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
DDX41Q9UJV9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
DDX41Q9UJV9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
DDX41Q9UJV9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC27.26■■□□□ 1.95
DDX41Q9UJV9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC27.26■■□□□ 1.95
DDX41Q9UJV9 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
DDX41Q9UJV9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
DDX41Q9UJV9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
DDX41Q9UJV9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC27.25■■□□□ 1.95
DDX41Q9UJV9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
DDX41Q9UJV9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC27.25■■□□□ 1.95
DDX41Q9UJV9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
DDX41Q9UJV9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC27.24■■□□□ 1.95
DDX41Q9UJV9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
DDX41Q9UJV9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
DDX41Q9UJV9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
DDX41Q9UJV9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.24■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 969.5 ms