Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.83■□□□□ 0.6
SMCO4Q9NRQ5 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMCO4Q9NRQ5 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMCO4Q9NRQ5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 C9orf163-202ENST00000624034 2573 ntBASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 ABCB10P4-201ENST00000566803 2184 ntBASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 AL121603.2-201ENST00000557373 2117 ntBASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMCO4Q9NRQ5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMCO4Q9NRQ5 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 WHAMMP2-203ENST00000563942 1603 ntBASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 EP400NL-214ENST00000641289 2402 ntBASIC18.78■□□□□ 0.6
SMCO4Q9NRQ5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.77■□□□□ 0.6
SMCO4Q9NRQ5 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMCO4Q9NRQ5 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SMCO4Q9NRQ5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SMCO4Q9NRQ5 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMCO4Q9NRQ5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMCO4Q9NRQ5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMCO4Q9NRQ5 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.73■□□□□ 0.59
SMCO4Q9NRQ5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.73■□□□□ 0.59
SMCO4Q9NRQ5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms