Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC091060.1-201ENST00000623524 1766 ntBASIC21■□□□□ 0.95
LIME1Q9H400 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21■□□□□ 0.95
LIME1Q9H400 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21■□□□□ 0.95
LIME1Q9H400 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LIME1Q9H400 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21■□□□□ 0.95
LIME1Q9H400 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIME1Q9H400 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIME1Q9H400 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
LIME1Q9H400 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIME1Q9H400 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.99■□□□□ 0.95
LIME1Q9H400 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.99■□□□□ 0.95
LIME1Q9H400 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIME1Q9H400 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIME1Q9H400 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.98■□□□□ 0.95
LIME1Q9H400 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIME1Q9H400 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIME1Q9H400 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIME1Q9H400 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIME1Q9H400 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIME1Q9H400 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
LIME1Q9H400 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIME1Q9H400 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIME1Q9H400 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIME1Q9H400 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.97■□□□□ 0.95
LIME1Q9H400 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.97■□□□□ 0.95
LIME1Q9H400 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIME1Q9H400 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LIME1Q9H400 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIME1Q9H400 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIME1Q9H400 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIME1Q9H400 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LIME1Q9H400 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIME1Q9H400 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.96■□□□□ 0.95
LIME1Q9H400 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.96■□□□□ 0.95
LIME1Q9H400 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.96■□□□□ 0.95
LIME1Q9H400 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.96■□□□□ 0.95
LIME1Q9H400 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.96■□□□□ 0.95
LIME1Q9H400 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIME1Q9H400 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.95■□□□□ 0.94
LIME1Q9H400 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.95■□□□□ 0.94
LIME1Q9H400 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIME1Q9H400 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIME1Q9H400 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.94■□□□□ 0.94
LIME1Q9H400 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIME1Q9H400 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIME1Q9H400 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
LIME1Q9H400 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LIME1Q9H400 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIME1Q9H400 AC019171.1-201ENST00000601251 1056 ntBASIC20.94■□□□□ 0.94
LIME1Q9H400 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIME1Q9H400 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIME1Q9H400 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIME1Q9H400 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.93■□□□□ 0.94
LIME1Q9H400 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.93■□□□□ 0.94
LIME1Q9H400 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.93■□□□□ 0.94
LIME1Q9H400 AC087393.1-201ENST00000582896 145 ntBASIC20.93■□□□□ 0.94
LIME1Q9H400 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIME1Q9H400 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.93■□□□□ 0.94
LIME1Q9H400 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIME1Q9H400 Z92544.1-202ENST00000571933 1220 ntBASIC20.92■□□□□ 0.94
LIME1Q9H400 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIME1Q9H400 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.91■□□□□ 0.94
LIME1Q9H400 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIME1Q9H400 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.91■□□□□ 0.94
LIME1Q9H400 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIME1Q9H400 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.91■□□□□ 0.94
LIME1Q9H400 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LIME1Q9H400 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIME1Q9H400 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIME1Q9H400 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIME1Q9H400 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIME1Q9H400 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.89■□□□□ 0.94
LIME1Q9H400 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
LIME1Q9H400 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIME1Q9H400 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIME1Q9H400 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.89■□□□□ 0.93
LIME1Q9H400 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIME1Q9H400 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIME1Q9H400 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.89■□□□□ 0.93
LIME1Q9H400 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIME1Q9H400 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LIME1Q9H400 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIME1Q9H400 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LIME1Q9H400 LONRF2P2-201ENST00000439212 571 ntBASIC20.88■□□□□ 0.93
LIME1Q9H400 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIME1Q9H400 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIME1Q9H400 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.87■□□□□ 0.93
LIME1Q9H400 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.87■□□□□ 0.93
LIME1Q9H400 RPS2P7-201ENST00000447334 885 ntBASIC20.87■□□□□ 0.93
LIME1Q9H400 MIR4787-201ENST00000607364 84 ntBASIC20.87■□□□□ 0.93
LIME1Q9H400 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIME1Q9H400 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LIME1Q9H400 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.87■□□□□ 0.93
LIME1Q9H400 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.86■□□□□ 0.93
LIME1Q9H400 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.86■□□□□ 0.93
LIME1Q9H400 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms