Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
UBQLN3Q9H347 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
UBQLN3Q9H347 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.08■■□□□ 1.13
UBQLN3Q9H347 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.08■■□□□ 1.13
UBQLN3Q9H347 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
UBQLN3Q9H347 ERN1-208ENST00000606895 2068 ntBASIC22.07■■□□□ 1.12
UBQLN3Q9H347 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
UBQLN3Q9H347 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
UBQLN3Q9H347 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
UBQLN3Q9H347 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
UBQLN3Q9H347 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
UBQLN3Q9H347 AC010501.1-201ENST00000606270 1962 ntBASIC22.06■■□□□ 1.12
UBQLN3Q9H347 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.06■■□□□ 1.12
UBQLN3Q9H347 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
UBQLN3Q9H347 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
UBQLN3Q9H347 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
UBQLN3Q9H347 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 DUX4L18-201ENST00000553347 1267 ntBASIC22.04■■□□□ 1.12
UBQLN3Q9H347 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
UBQLN3Q9H347 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
UBQLN3Q9H347 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.02■■□□□ 1.12
UBQLN3Q9H347 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
UBQLN3Q9H347 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.02■■□□□ 1.12
UBQLN3Q9H347 MIR6765-201ENST00000614092 87 ntBASIC22.02■■□□□ 1.12
UBQLN3Q9H347 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
UBQLN3Q9H347 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
UBQLN3Q9H347 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
UBQLN3Q9H347 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.01■■□□□ 1.11
UBQLN3Q9H347 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
UBQLN3Q9H347 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
UBQLN3Q9H347 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22■■□□□ 1.11
UBQLN3Q9H347 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22■■□□□ 1.11
UBQLN3Q9H347 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
UBQLN3Q9H347 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
UBQLN3Q9H347 AC018755.3-202ENST00000596210 929 ntBASIC22■■□□□ 1.11
UBQLN3Q9H347 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
UBQLN3Q9H347 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
UBQLN3Q9H347 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
UBQLN3Q9H347 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
UBQLN3Q9H347 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms