Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 AC092028.1-203ENST00000608262 953 ntBASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.89■■□□□ 1.9
UPF3AQ9H1J1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.89
UPF3AQ9H1J1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
UPF3AQ9H1J1 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
UPF3AQ9H1J1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.88■■□□□ 1.89
UPF3AQ9H1J1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.88■■□□□ 1.89
UPF3AQ9H1J1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.88■■□□□ 1.89
UPF3AQ9H1J1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 MIR4281-201ENST00000580852 62 ntBASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.87■■□□□ 1.89
UPF3AQ9H1J1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.86■■□□□ 1.89
UPF3AQ9H1J1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
UPF3AQ9H1J1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
UPF3AQ9H1J1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
UPF3AQ9H1J1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
UPF3AQ9H1J1 MIR638-201ENST00000385237 100 ntBASIC26.83■■□□□ 1.89
UPF3AQ9H1J1 MIR935-201ENST00000401179 91 ntBASIC26.83■■□□□ 1.89
UPF3AQ9H1J1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.83■■□□□ 1.88
UPF3AQ9H1J1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
UPF3AQ9H1J1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
UPF3AQ9H1J1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
UPF3AQ9H1J1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.82■■□□□ 1.88
UPF3AQ9H1J1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
UPF3AQ9H1J1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC26.81■■□□□ 1.88
UPF3AQ9H1J1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.81■■□□□ 1.88
UPF3AQ9H1J1 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
UPF3AQ9H1J1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 AC131281.2-201ENST00000520478 145 ntBASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
UPF3AQ9H1J1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.79■■□□□ 1.88
UPF3AQ9H1J1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.79■■□□□ 1.88
UPF3AQ9H1J1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
UPF3AQ9H1J1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
UPF3AQ9H1J1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
UPF3AQ9H1J1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.78■■□□□ 1.88
UPF3AQ9H1J1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.78■■□□□ 1.88
UPF3AQ9H1J1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.78■■□□□ 1.88
UPF3AQ9H1J1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
UPF3AQ9H1J1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.77■■□□□ 1.88
UPF3AQ9H1J1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.77■■□□□ 1.88
UPF3AQ9H1J1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.77■■□□□ 1.88
UPF3AQ9H1J1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
UPF3AQ9H1J1 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
UPF3AQ9H1J1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
UPF3AQ9H1J1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
UPF3AQ9H1J1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
UPF3AQ9H1J1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
UPF3AQ9H1J1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.76■■□□□ 1.87
UPF3AQ9H1J1 AL139246.5-201ENST00000606645 996 ntBASIC26.76■■□□□ 1.87
UPF3AQ9H1J1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 AC011551.1-201ENST00000614101 683 ntBASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
UPF3AQ9H1J1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 AL117332.1-201ENST00000622628 974 ntBASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
UPF3AQ9H1J1 AP004609.3-201ENST00000610705 1884 ntBASIC26.73■■□□□ 1.87
UPF3AQ9H1J1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms