Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
COL12A1Q99715 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL12A1Q99715 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
COL12A1Q99715 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL12A1Q99715 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.33■■□□□ 1
COL12A1Q99715 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.33■■□□□ 1
COL12A1Q99715 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL12A1Q99715 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL12A1Q99715 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
COL12A1Q99715 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL12A1Q99715 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL12A1Q99715 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL12A1Q99715 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
COL12A1Q99715 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
COL12A1Q99715 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
COL12A1Q99715 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL12A1Q99715 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL12A1Q99715 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL12A1Q99715 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL12A1Q99715 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL12A1Q99715 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL12A1Q99715 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL12A1Q99715 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.3■■□□□ 1
COL12A1Q99715 AL356740.2-201ENST00000601559 647 ntBASIC21.3■■□□□ 1
COL12A1Q99715 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.3■■□□□ 1
COL12A1Q99715 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.3■■□□□ 1
COL12A1Q99715 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.3■■□□□ 1
COL12A1Q99715 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL12A1Q99715 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
COL12A1Q99715 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
COL12A1Q99715 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL12A1Q99715 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.29■■□□□ 1
COL12A1Q99715 UNC93B3-201ENST00000308076 687 ntBASIC21.28■■□□□ 1
COL12A1Q99715 ID1-201ENST00000376105 1233 ntBASIC21.28■■□□□ 1
COL12A1Q99715 AC024257.2-201ENST00000549699 147 ntBASIC21.28■■□□□ 1
COL12A1Q99715 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.28■■□□□ 1
COL12A1Q99715 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL12A1Q99715 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL12A1Q99715 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
COL12A1Q99715 EDA-201ENST00000338901 1233 ntBASIC21.27■□□□□ 0.99
COL12A1Q99715 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL12A1Q99715 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL12A1Q99715 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.26■□□□□ 0.99
COL12A1Q99715 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.26■□□□□ 0.99
COL12A1Q99715 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL12A1Q99715 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL12A1Q99715 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL12A1Q99715 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL12A1Q99715 AC120024.1-201ENST00000562672 995 ntBASIC21.25■□□□□ 0.99
COL12A1Q99715 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
COL12A1Q99715 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL12A1Q99715 AL139393.2-201ENST00000608721 2025 ntBASIC21.25■□□□□ 0.99
COL12A1Q99715 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.24■□□□□ 0.99
COL12A1Q99715 MIR4281-201ENST00000580852 62 ntBASIC21.24■□□□□ 0.99
COL12A1Q99715 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
COL12A1Q99715 WHAMMP3-201ENST00000611636 1609 ntBASIC21.24■□□□□ 0.99
COL12A1Q99715 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL12A1Q99715 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.24■□□□□ 0.99
COL12A1Q99715 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.24■□□□□ 0.99
COL12A1Q99715 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL12A1Q99715 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL12A1Q99715 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL12A1Q99715 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL12A1Q99715 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL12A1Q99715 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL12A1Q99715 MIR939-201ENST00000401314 82 ntBASIC21.23■□□□□ 0.99
COL12A1Q99715 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL12A1Q99715 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL12A1Q99715 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL12A1Q99715 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL12A1Q99715 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
COL12A1Q99715 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.23■□□□□ 0.99
COL12A1Q99715 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.22■□□□□ 0.99
COL12A1Q99715 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 IKBKGP1-201ENST00000612193 1073 ntBASIC21.22■□□□□ 0.99
COL12A1Q99715 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.22■□□□□ 0.99
COL12A1Q99715 AP001330.3-201ENST00000520123 633 ntBASIC21.22■□□□□ 0.99
COL12A1Q99715 AC022517.1-201ENST00000592429 346 ntBASIC21.22■□□□□ 0.99
COL12A1Q99715 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL12A1Q99715 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL12A1Q99715 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.21■□□□□ 0.99
COL12A1Q99715 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL12A1Q99715 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL12A1Q99715 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
COL12A1Q99715 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.19■□□□□ 0.98
COL12A1Q99715 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL12A1Q99715 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.19■□□□□ 0.98
COL12A1Q99715 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.19■□□□□ 0.98
COL12A1Q99715 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.19■□□□□ 0.98
COL12A1Q99715 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL12A1Q99715 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL12A1Q99715 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.18■□□□□ 0.98
COL12A1Q99715 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.18■□□□□ 0.98
COL12A1Q99715 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.18■□□□□ 0.98
COL12A1Q99715 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms